The New York Stem Cell Foundation Research Institute
The mission of The New York Stem Cell Foundation is to cure the major diseases of our time through stem cell research$1. .$1
Medical Research • Events • Research Funding • stem cell • scientific research
51 - 200
(Associate) Data Engineer
May 19
🔄 Hybrid – Manhattan
The New York Stem Cell Foundation Research Institute
The mission of The New York Stem Cell Foundation is to cure the major diseases of our time through stem cell research$1. .$1
Medical Research • Events • Research Funding • stem cell • scientific research
51 - 200
Description
• Develop, deploy, and document software that supports the analysis, annotation, and quality control pipelines for data • Work with both data science and software engineering teams, as well as end user biologists, on requirements for processing, analyzing, and generate appropriate logs and reports of data • Ingest, process, and perform first quality and balance controls of large datasets of microscopy images, both on premise and on cloud servers • Deploy existing pipelines for image processing for data standardization, quality control, characterization and feature extraction, both on premise and on cloud servers • Develop and implement novel data visualization strategies to summarize results and QC features • Ingest data from screens and process it to look for first impressions, outliers and nuances • Optimize the pipelines to be operated on different clusters and virtual machines • Centralize and optimize our existing workflows, manage data migration and distribution
Requirements
• B.S. or M.S. in computer science, engineering, data science, or mathematics • 2+ years of experience developing data models and implementing data mining, migration and management • Experience with pipeline deploying and resource optimization • Strong database experience, must know SQL • Strong programming experience, must know Python • Strong experience with cloud computing infrastructures on AWS, Google Cloud, etc. (AWS preferred) • Familiarity with Python libraries for data framing and visualization (eg Pandas, Seaborn, pyplot) • Familiarity with GPU programming and resource optimization and parallel computing • Experience with Git repository systems • Knowledge of image processing techniques (preferable) • Experience with microscopy images and fluorescence images (preferable)
Benefits
• 11 paid holidays • Generous Accrued Time Off increasing with years of service • Generous paid sick time • Annual day of service
Apply Now